Hi,
Thanks for your response.
For error "Could not load file or assembly...", we can try to re-add reference to this assembly in Visual Studio 2005.
For the second error, there is the same type in two assembles: "System.Web.UI.WebControls.TreeView" and "Microsoft.Web.UI.WebControls.TreeView". ASP.NET 2.0 uses former one, you can remove "Microsoft.Web.UI.WebControls.TreeView" from your website.
You also can create new ASP.NET 2.0 project, and then add the contents to this new one from the converted one, and then add reference for it.
Thanks.