Thanks for letting us know about this problem! This looks like a valid bug.
How are you deploying your app? Am I correct in guessing you are using the "Publish web site" feature of VS or the "aspnet_compiler"? If not, can you please let me know how you deploy it?
Do you mean that the time zone is different on the computer where you built your app and the server where you deploy?
Until we fix the bug, one workaround I can think of is to "touch" the precompiled dlls in our app's bin directory to update the last modfied time on them.